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New data about the evolution of immune response genes in plants

Posted January 21, 2015
Researchers have examined a group of resistance genes present in the Arabidopsis thaliana strain Landsberg.

Researchers have examined a group of resistance genes present in the Arabidopsis thaliana strain Landsberg.

A recently published study offers new clues about the evolution of the immune system in European populations of the plant Arabidopsis thaliana and the underlying genetic mechanisms associated with immunity.

The study, published in the journal PLOS Genetics, is signed by Rubén Alcázar, Ramón y Cajal researcher in the Department of Natural Products, Plant Biology and Soil Science of the Faculty of Pharmacy at the University of Barcelona (UB), together with researchers from the Max Plack Institute for Plant Breeding Research and the Max Planck Institute for Developmental Biology, in Germany.

The species Arabidopsis thaliana, which is naturally distributed across the northern hemisphere, belongs to the same family than mustard. The species is used as model in plant biology studies because its genome is relatively small and appropriate for genetic studies.

The evolutionary process of immune-related genes

The natural evolution of resistance (R) genes in plants can cause autoimmunity when combined with different genetic backgrounds. This phenomenon is called immune-related hybrid incompatibility (HI); it leads to growth inhibition and fitness loss due to inappropriate activation of defence. HI likely reflects different evolutionary paths of immune-related genes in nature. However, it is not clear if divergent paths are due to local adaptation or a result of genetic drift, in other words, the change in the frequency of a gene variant (allele) in a population due to random sampling.

In the study, researchers have examined the genetic architecture of a group of resistance genes present in the Central European Arabidopsis thaliana strain Landsberg. This strain is not compatible with Central Asian ones; in other words, there is a genetic mechanism that hampers hybrid growth. “We show that expression of one gene (R3) within the Landsberg cluster of eight tandem R genes (R1–R8) controls the balance between growth and defence ,but that R3 needs at least one other co-acting member within the R locus to condition the incompatibility with Central Asian strains”, explains Rubén Alcázar.

Long-term incompatibility

Researchers traced the R1–R8 haplotype to a local population of Arabidopsis Landsberg relatives where it also underlies hybrid incompatibility with Central Asian accessions. Occurrence of the incompatible haplotype in 30% of genetically diverse local individuals, suggests that it has not arisen recently and has been maintained through selection or drift for several decades.

Co-occurrence in the same population of individuals containing different resistance genes that do not cause HI provides a basis for determining genetic and environmental forces influencing how plant immunity genes evolve and diversify.


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