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Entire Neanderthal Genome Decoded

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Posted March 20, 2013

The Max Planck Institute for Evolutionary Anthropology, in Leipzig, Germany, has
completed the genome sequence of a Neandertal and makes the entire sequence
available to the scientific community today.

In 2010, Dr. Svante Pääbo and his colleagues presented the first draft version of the
Neandertal genome from data collected from three bones found in a cave in Croatia.
They have now used a toe bone excavated in 2010 in Denisova Cave in southern
Siberia to generate a high-quality genome from a single Neandertal individual.

The Leipzig team has used sensitive techniques they have developed over the past two
years to sequence every position in the genome about 50 times over, using DNA
extracted from 0.038 grams of the toe bone. The analysis of the genome together with
partial genome sequences from other Neandertals, and the genome from a small finger
bone discovered in the same cave, shows that the individual is closely related to other
Neandertals in Europe and western Russia (see Figure). Remarkably, Neandertals and
their relatives, Denisovans, were both present in this unique cave in the Altai Mountains
on the border between Russia, China, Mongolia and Kazakhstan.

2013-03-19_figure[1]

In the 2010 draft version of the Neandertal genome, each position was determined, on average, once. In the now-completed version of the genome every position was determined on average 50 times over. This allows even the small differences between the copies of genes that this Neandertal individual inherited from its mother and father to be distinguished. Today, the Leipzig group makes the entire Neandertal genome sequence available for the scientific community over the internet.

“The genome is of very high quality”, says Dr. Kay Prüfer, who coordinates the analyses
of the genome in Leipzig. “It matches the quality of the Denisovan genome, presented
last year, and is as good as or even better than the multiple present-day human genomes
available to date.”


“We are in the process of comparing this Neandertal genome to the Denisovan genome as
well as to the draft genomes of other Neandertals. We will gain insights into many
aspects of the history of both Neandertals and Denisovans and refine our knowledge
about the genetic changes that occurred in the genomes of modern humans after they
parted ways with the ancestors of Neandertals and Denisovans” says Pääbo.
The group will present a paper describing the genome later this year. “But we make the
genome sequence freely available now to allow other scientists to profit from it even
before it is published” says Pääbo.


The project is made possible by financing from the Max Planck Society and is part of
efforts since almost 30 years by Dr. Pääbo’s group to study ancient DNA. The toe bone
was discovered by Professor Anatoly Derevianko and Professor Michael Shunkov from
the Russian Academy of Sciences in 2010 during their excavations at Denisova Cave, a
unique archaeological site which contains cultural layers indicating that human
occupation at the site started up to 280,000 years ago.

The genome is available at https://www.eva.mpg.de/neandertal/

 

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